Help On Case Fan Configuration?

I just recently built my first pc,
I bought a cit vantage case –
And a Asus Z75 pro 3 motherboard –
The case comes with 2 side fans that are connected through one cable that can be plugged into either the motherboard or directly to the psu. The problem is I would like them to go into the motherboard to be able to control the speed but I fear that the mother board cannot handle it. I was wondering whether I could plug both the psu into it and the motherboard, or would this create conflict.

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